3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09397

Details:

PFam ID : PF09397

PFam Domain Description : Ftsk gamma domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 955

Average sequence length: 66.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09397	C5M062_9ALVE_78_159	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09397	C3FDB8_BACTU_7_74	100

Sequence based PCA Plot of the family - PF09397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=25 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay