3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09396

Details:

PFam ID : PF09396

PFam Domain Description : Thrombin light chain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 23

Average sequence length: 44.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09396	C5M062_9ALVE_78_159	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09396	Q69EZ8_HUMAN_1_36	95.4

Sequence based PCA Plot of the family - PF09396 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay