3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09392

Details:

PFam ID : PF09392

PFam Domain Description : Type III secretion needle MxiH like

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 141

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09392	Q84CS1_BORPE_4_107	53.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09392	Q9I315_PSEAE_28_111	95.7

Sequence based PCA Plot of the family - PF09392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay