3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09383

Details:

PFam ID : PF09383

PFam Domain Description : NIL domain

Number of Sequence in 50% Dataset : 191

Number of Sequence in Full Dataset : 865

Average sequence length: 74.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09383	D8UFW2_VOLCA_461_521	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09383	E8UFA3_TAYEM_259_360	100

Sequence based PCA Plot of the family - PF09383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay