3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09380

Details:

PFam ID : PF09380

PFam Domain Description : FERM central domain

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 318

Average sequence length: 89.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09380	A8Y219_CAEBR_223_296	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09380	B0X8E2_CULQU_528_640	100

Sequence based PCA Plot of the family - PF09380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=9 Length=18
Motif3 Start=93 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay