3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09379

Details:

PFam ID : PF09379

PFam Domain Description : Ferric reductase like transmembrane component

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 561

Average sequence length: 86.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09379	A9UUT1_MONBE_19_104	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09379	A9UUT1_MONBE_19_104	99.6

Sequence based PCA Plot of the family - PF09379 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay