3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09378

Details:

PFam ID : PF09378

PFam Domain Description : HAS barrel domain

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 153

Average sequence length: 91.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09378	E7QNP2_9EURY_64_144	19.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09378	B9KZE9_THERP_6_121	50

Sequence based PCA Plot of the family - PF09378 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay