3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09375

Details:

PFam ID : PF09375

PFam Domain Description : Imelysin

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 549

Average sequence length: 281.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09375	E5VEK4_9BACE_260_383	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09375	E1LSQ4_STRMT_48_152	97.9

Sequence based PCA Plot of the family - PF09375 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=300 Length=8
Motif4 Start=283 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay