3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09371

Details:

PFam ID : PF09371

PFam Domain Description : Tex-like protein N-terminal domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 834

Average sequence length: 189.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09371	A8P3Z1_BRUMA_1_64	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09371	D8USF0_9MICC_19_234	100

Sequence based PCA Plot of the family - PF09371 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=175 Length=8
Motif2 Start=116 Length=8
Motif3 Start=98 Length=8
Motif4 Start=20 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay