3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09370

Details:

PFam ID : PF09370

PFam Domain Description : TIM-barrel signal transduction protein

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 136

Average sequence length: 241.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09370	A3U164_9RHOB_37_191	68.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09370	E5Y720_BILWA_5_277	100

Sequence based PCA Plot of the family - PF09370 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=205 Length=8
Motif2 Start=227 Length=11
Motif3 Start=109 Length=8
Motif4 Start=83 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay