3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09369

Details:

PFam ID : PF09369

PFam Domain Description : Domain of unknown function (DUF1998)

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 594

Average sequence length: 86.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09369	C6HIF3_AJECH_601_628	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09369	D4D1P0_TRIVH_986_1049	88

Sequence based PCA Plot of the family - PF09369 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=51 Length=8
Motif3 Start=77 Length=8
Motif4 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay