3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09364

Details:

PFam ID : PF09364

PFam Domain Description : XFP N-terminal domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 409

Average sequence length: 348.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09364	Q4BWM4_CROWT_1_108	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09364	E4NET6_KITSK_32_376	100

Sequence based PCA Plot of the family - PF09364 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=17
Motif2 Start=36 Length=11
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay