3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09363

Details:

PFam ID : PF09363

PFam Domain Description : XFP C-terminal domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 360

Average sequence length: 196.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09363	D9W508_9ACTO_521_655	5.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09363	E3ESY9_HYDTT_721_791	100

Sequence based PCA Plot of the family - PF09363 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=127 Length=8
Motif2 Start=20 Length=8
Motif3 Start=1 Length=8
Motif4 Start=95 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay