3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09362

Details:

PFam ID : PF09362

PFam Domain Description : Domain of unknown function (DUF1996)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 336

Average sequence length: 209.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09362	C7R670_KANKD_159_420	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09362	C9SGY2_VERA1_35_184	99.7

Sequence based PCA Plot of the family - PF09362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=251 Length=11
Motif4 Start=169 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay