3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09359

Details:

PFam ID : PF09359

PFam Domain Description : VTC domain

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 382

Average sequence length: 223.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09359	A2E718_TRIVA_851_953	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09359	A0Y3J4_9GAMM_70_193	100

Sequence based PCA Plot of the family - PF09359 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=77 Length=8
Motif3 Start=102 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay