3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09354

Details:

PFam ID : PF09354

PFam Domain Description : HNF3 C-terminal domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 55

Average sequence length: 61.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09354	D3K2C0_THELG_398_461	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09354	E9H4D8_DAPPU_486_530	98.1

Sequence based PCA Plot of the family - PF09354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay