3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09353

Details:

PFam ID : PF09353

PFam Domain Description : Domain of unknown function (DUF1995)

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 186

Average sequence length: 217.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09353	B8CA73_THAPS_68_355	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09353	B7G530_PHATC_72_324	100

Sequence based PCA Plot of the family - PF09353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=23 Length=8
Motif4 Start=197 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay