3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09350

Details:

PFam ID : PF09350

PFam Domain Description : Domain of unknown function (DUF1992)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 333

Average sequence length: 84.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09350	B7HTD9_BACC7_1_27	21.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09350	A0K0U1_ARTS2_55_178	100

Sequence based PCA Plot of the family - PF09350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=12 Length=23
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay