3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09348

Details:

PFam ID : PF09348

PFam Domain Description : Domain of unknown function (DUF1990)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 138

Average sequence length: 148.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09348	A4FHJ3_SACEN_96_210	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09348	C7PZ31_CATAD_16_195	100

Sequence based PCA Plot of the family - PF09348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=10 Length=8
Motif3 Start=28 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay