3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09347

Details:

PFam ID : PF09347

PFam Domain Description : Domain of unknown function (DUF1989)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 471

Average sequence length: 166.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09347	A9HL29_9RHOB_1_77	60.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09347	Q2UCB0_ASPOR_1_179	100

Sequence based PCA Plot of the family - PF09347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=79 Length=8
Motif3 Start=17 Length=8
Motif4 Start=189 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay