3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09345

Details:

PFam ID : PF09345

PFam Domain Description : Domain of unknown function (DUF1987)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 109

Average sequence length: 96.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09345	A1ZKI4_9BACT_13_114	87.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09345	A1ZKI4_9BACT_13_114	100

Sequence based PCA Plot of the family - PF09345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=26 Length=8
Motif3 Start=51 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay