3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09344

Details:

PFam ID : PF09344

PFam Domain Description : CT1975-like protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 202

Average sequence length: 348.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09344	D8E1P1_ECOLX_5_122	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09344	Q3ZZ78_DEHSC_8_420	100

Sequence based PCA Plot of the family - PF09344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=345 Length=8
Motif2 Start=316 Length=8
Motif3 Start=222 Length=14
Motif4 Start=207 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay