3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09343

Details:

PFam ID : PF09343

PFam Domain Description : Conserved hypothetical protein 2217 (DUF2460)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 134

Average sequence length: 192.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09343	B8EKT6_METSB_633_716	59.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09343	B6R575_9RHOB_6_214	100

Sequence based PCA Plot of the family - PF09343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=122 Length=8
Motif2 Start=200 Length=8
Motif3 Start=107 Length=8
Motif4 Start=170 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay