3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09341

Details:

PFam ID : PF09341

PFam Domain Description : Transcription factor Pcc1

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 213

Average sequence length: 75.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09341	A2BJY4_HYPBU_10_90	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09341	Q3V3J9_MOUSE_170_228	100

Sequence based PCA Plot of the family - PF09341 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=59 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay