3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09339

Details:

PFam ID : PF09339

PFam Domain Description : IclR helix-turn-helix domain

Number of Sequence in 50% Dataset : 317

Number of Sequence in Full Dataset : 3398

Average sequence length: 50.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09339	D1C8K6_SPHTD_12_70	81.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09339	D1C8K6_SPHTD_12_70	100

Sequence based PCA Plot of the family - PF09339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay