3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09338

Details:

PFam ID : PF09338

PFam Domain Description : Glycine/sarcosine/betaine reductase component B subunits

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 180

Average sequence length: 330.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09338	B2A2P8_NATTJ_3_373	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09338	Q73RL1_TREDE_1_436	100

Sequence based PCA Plot of the family - PF09338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=8
Motif2 Start=64 Length=11
Motif3 Start=240 Length=8
Motif4 Start=322 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay