3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09337

Details:

PFam ID : PF09337

PFam Domain Description : His(2)-Cys(2) zinc finger

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 98

Average sequence length: 38.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09337	C5M148_9ALVE_710_748	21.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09337	D2A4C9_TRICA_262_303	100

Sequence based PCA Plot of the family - PF09337 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=11
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay