3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09336

Details:

PFam ID : PF09336

PFam Domain Description : Vps4 C terminal oligomerisation domain

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 447

Average sequence length: 54.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09336	E4YQD5_OIKDI_107_154	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09336	Q5CSB4_CRYPV_390_458	100

Sequence based PCA Plot of the family - PF09336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay