3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09333

Details:

PFam ID : PF09333

PFam Domain Description : ATG C terminal domain

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 199

Average sequence length: 94.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09333	C4QAJ3_SCHMA_2920_3021	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09333	C4QAJ3_SCHMA_2920_3021	100

Sequence based PCA Plot of the family - PF09333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay