3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09330

Details:

PFam ID : PF09330

PFam Domain Description : D-lactate dehydrogenase, membrane binding

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 113

Average sequence length: 276.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09330	B5Y3D6_PHATC_425_667	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09330	E1VXV1_ARTAR_279_570	100

Sequence based PCA Plot of the family - PF09330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=107 Length=8
Motif3 Start=28 Length=14
Motif4 Start=210 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay