3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09328

Details:

PFam ID : PF09328

PFam Domain Description : Domain of unknown function (DUF1984)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 39

Average sequence length: 221.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09328	B3FMV8_THLCA_376_435	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09328	A7M779_FAGES_221_482	100

Sequence based PCA Plot of the family - PF09328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=61 Length=11
Motif2 Start=179 Length=8
Motif3 Start=222 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay