3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09325

Details:

PFam ID : PF09325

PFam Domain Description : Vps5 C terminal like

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 361

Average sequence length: 194.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09325	E3L0C9_PUCGT_219_479	81.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09325	D2VCX2_NAEGR_512_770	100

Sequence based PCA Plot of the family - PF09325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=253 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay