3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09323

Details:

PFam ID : PF09323

PFam Domain Description : Domain of unknown function (DUF1980)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 144

Average sequence length: 161.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09323	E5WN69_9BACI_8_227	68.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09323	E5WN69_9BACI_8_227	100

Sequence based PCA Plot of the family - PF09323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=155 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay