3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09322

Details:

PFam ID : PF09322

PFam Domain Description : Domain of unknown function (DUF1979)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 16

Average sequence length: 52.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09322	D0ZYT4_CHLPP_295_537	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09322	Q7XEP9_ORYSJ_3_49	93.3

Sequence based PCA Plot of the family - PF09322 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay