3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09320

Details:

PFam ID : PF09320

PFam Domain Description : Domain of unknown function (DUF1977)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 165

Average sequence length: 105.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09320	Q23H36_TETTH_177_289	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09320	A5K528_PLAVS_259_367	100

Sequence based PCA Plot of the family - PF09320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=51 Length=8
Motif3 Start=30 Length=8
Motif4 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay