3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09318

Details:

PFam ID : PF09318

PFam Domain Description : Domain of unknown function (DUF1975)

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 268

Average sequence length: 182.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09318	C8L593_STAAU_7_109	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09318	Q9CFL5_LACLA_1_204	100

Sequence based PCA Plot of the family - PF09318 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=19 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay