3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09316

Details:

PFam ID : PF09316

PFam Domain Description : C-myb, C-terminal

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 52

Average sequence length: 147.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09316	A2A5P3_MOUSE_99_215	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09316	E0VYT5_PEDHC_414_600	96.0

Sequence based PCA Plot of the family - PF09316 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=177 Length=8
Motif3 Start=1 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay