3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09308

Details:

PFam ID : PF09308

PFam Domain Description : LuxQ, periplasmic

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 28

Average sequence length: 224.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09308	A3YHA2_9GAMM_39_288	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09308	A6D3A6_9VIBR_39_277	100

Sequence based PCA Plot of the family - PF09308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=84 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay