3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09302

Details:

PFam ID : PF09302

PFam Domain Description : XLF (XRCC4-like factor)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 88

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09302	Q6CAT0_YARLI_7_173	86.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09302	E9IMX7_SOLIN_56_211	80

Sequence based PCA Plot of the family - PF09302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=166 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay