3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09299

Details:

PFam ID : PF09299

PFam Domain Description : Mu transposase, C-terminal

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 356

Average sequence length: 65.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09299	C0DYE6_EIKCO_228_272	35.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09299	D6U3P7_9CHLR_444_514	100

Sequence based PCA Plot of the family - PF09299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay