3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09296

Details:

PFam ID : PF09296

PFam Domain Description : NADH pyrophosphatase-like rudimentary NUDIX domain

Number of Sequence in 50% Dataset : 197

Number of Sequence in Full Dataset : 454

Average sequence length: 106.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09296	B8KSC4_9GAMM_14_106	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09296	B8KSC4_9GAMM_14_106	96.6

Sequence based PCA Plot of the family - PF09296 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay