3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09295

Details:

PFam ID : PF09295

PFam Domain Description : ChAPs (Chs5p-Arf1p-binding proteins)

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 148

Average sequence length: 237.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09295	D4D922_TRIVH_1_100	76.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09295	E2BIP9_9HYME_326_557	100

Sequence based PCA Plot of the family - PF09295 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay