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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09285
Details:

PFam ID : PF09285

PFam Domain Description : Elongation factor P, C-terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 879

Average sequence length: 55.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF09285A8NRT4_COPC7_76_160No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF09285D4G8B0_RIEPU_129_18599.6
Sequence based PCA Plot of the family - PF09285 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=8
Motif2 Start=23 Length=8
Motif3 Start=35 Length=23
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay