3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09280

Details:

PFam ID : PF09280

PFam Domain Description : XPC-binding domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 153

Average sequence length: 57.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09280	A2DY94_TRIVA_215_268	47.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09280	E7L9H9_TRYCR_234_292	100

Sequence based PCA Plot of the family - PF09280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay