3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09278

Details:

PFam ID : PF09278

PFam Domain Description : MerR, DNA binding

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 1008

Average sequence length: 64.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09278	Q9F390_STRCO_54_119	8.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09278	Q6MP62_BDEBA_56_121	99.7

Sequence based PCA Plot of the family - PF09278 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay