3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09271 Details: PFam ID : PF09271 PFam Domain Description : LAG1, DNA binding Number of Sequence in 50% Dataset : 17 Number of Sequence in Full Dataset : 54 Average sequence length: 134.9 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF09271C4Q935_SCHMA_191_37481.2 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF09271Q4P201_USTMA_378_564100 Sequence based PCA Plot of the family - PF09271 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=1 Length=8Motif2 Start=136 Length=8Motif3 Start=170 Length=8Motif4 Start=18 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF09271
PFam Domain Description : LAG1, DNA binding
Number of Sequence in 50% Dataset : 17
Number of Sequence in Full Dataset : 54
Average sequence length: 134.9
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER