3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09270

Details:

PFam ID : PF09270

PFam Domain Description : Beta-trefoil DNA-binding domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 44

Average sequence length: 144.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09270	Q4S455_TETNG_210_306	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09270	E4YWY2_OIKDI_1_51	100

Sequence based PCA Plot of the family - PF09270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=11 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay