3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09268

Details:

PFam ID : PF09268

PFam Domain Description : Clathrin, heavy-chain linker

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 70

Average sequence length: 23.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09268	E4X982_OIKDI_331_354	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09268	E7R1U0_PICAD_334_356	95.6

Sequence based PCA Plot of the family - PF09268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay