3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09265

Details:

PFam ID : PF09265

PFam Domain Description : Cytokinin dehydrogenase 1, FAD and cytokinin binding

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 129

Average sequence length: 232.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09265	D2V8E5_NAEGR_336_633	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09265	F2ECH5_HORVD_257_551	100

Sequence based PCA Plot of the family - PF09265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=280 Length=19
Motif2 Start=135 Length=8
Motif3 Start=265 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay