3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09261

Details:

PFam ID : PF09261

PFam Domain Description : Alpha mannosidase, middle domain

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 673

Average sequence length: 78.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09261	Q7SDJ6_NEUCR_383_444	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09261	C1A9B1_GEMAT_293_388	100

Sequence based PCA Plot of the family - PF09261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay